IL_9RG7_011

3D structure

PDB id

9RG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro reconstituted NAA40-NAC bound 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RG7_011 not in the Motif Atlas

Geometric match to IL_7MLX_001

Geometric discrepancy: 0.3141

The information below is about IL_7MLX_001

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9RG7|1|L5|G|182
9RG7|1|L5|C|183
*
9RG7|1|L5|G|253
9RG7|1|L5|G|254
9RG7|1|L5|C|255

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35