IL_9RJA_055

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RJA_055 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.16

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RJA|1|A|C|1303
9RJA|1|A|G|1304
9RJA|1|A|G|1305
9RJA|1|A|A|1306
9RJA|1|A|U|1307
9RJA|1|A|U|1308
*
9RJA|1|A|A|1329
9RJA|1|A|U|1330
9RJA|1|A|G|1331
9RJA|1|A|A|1332
9RJA|1|A|A|1333
9RJA|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13