IL_9RJA_065

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CCC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RJA_065 not in the Motif Atlas

Homologous match to IL_2CSX_001

Geometric discrepancy: 0.2396

The information below is about IL_2CSX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RJA|1|Y|C|2
9RJA|1|Y|C|3
9RJA|1|Y|C|4
*
9RJA|1|Y|G|69
9RJA|1|Y|C|70
9RJA|1|Y|G|71

Current chains

Chain Y

A-site Phe-tRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA