IL_9RJA_074

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RJA_074 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1803

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9RJA|1|a|C|274
9RJA|1|a|C|275
9RJA|1|a|U|276
9RJA|1|a|G|277
9RJA|1|a|A|278
9RJA|1|a|A|279
9RJA|1|a|U|280
9RJA|1|a|C|281
*
9RJA|1|a|G|359
9RJA|1|a|U|360
9RJA|1|a|G|361
9RJA|1|a|A|362
9RJA|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains