IL_9ROR_037

3D structure

PDB id

9ROR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and RBFA (Outward conformation) (State M3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ROR_037 not in the Motif Atlas

Geometric match to IL_5AY2_003

Geometric discrepancy: 0.2206

The information below is about IL_5AY2_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9ROR|1|A|G|1393
9ROR|1|A|C|1394
9ROR|1|A|C|1395
*
9ROR|1|A|G|1412
9ROR|1|A|U|1413
9ROR|1|A|C|1414

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain X

28S ribosomal protein S29, mitochondrial