IL_9ROT_030

3D structure

PDB id

9ROT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UAUA*UG

Length

6 nucleotides

Bulged bases

9ROT|1|A|A|1258, 9ROT|1|A|U|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ROT_030 not in the Motif Atlas

Geometric match to IL_9DID_004

Geometric discrepancy: 0.2952

The information below is about IL_9DID_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9ROT|1|A|U|1257
9ROT|1|A|A|1258
9ROT|1|A|U|1259
9ROT|1|A|A|1260
*
9ROT|1|A|U|1335
9ROT|1|A|G|1336

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain H

28S ribosomal protein S10, mitochondrial

Chain Z

28S ribosomal protein S33, mitochondrial