IL_9ROT_038

3D structure

PDB id

9ROT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15, RBFA, and mtIF2 (State M2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ROT_038 not in the Motif Atlas

Geometric match to IL_8CRE_475

Geometric discrepancy: 0.1605

The information below is about IL_8CRE_475

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9ROT|1|A|A|1507
9ROT|1|A|C|1508
9ROT|1|A|U|1509
9ROT|1|A|U|1510
*
9ROT|1|A|A|1540
9ROT|1|A|U|1541
9ROT|1|A|U|1542
9ROT|1|A|U|1543

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain 3

Aurora kinase A-interacting protein

Chain 7

Translation initiation factor IF-2, mitochondrial