IL_9RPF_041

3D structure

PDB id

9RPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

9RPF|1|A|C|1484, 9RPF|1|A|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPF_041 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1693

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9RPF|1|A|C|1483
9RPF|1|A|C|1484
9RPF|1|A|G|1485
*
9RPF|1|A|C|1566
9RPF|1|A|A|1567
9RPF|1|A|U|1568
9RPF|1|A|G|1569

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein