IL_9RPF_044

3D structure

PDB id

9RPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit bound to METTL15 and mS37 (State M4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAGU*AUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPF_044 not in the Motif Atlas

Geometric match to IL_2R8S_002

Geometric discrepancy: 0.3688

The information below is about IL_2R8S_002

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9RPF|1|A|C|1500
9RPF|1|A|A|1501
9RPF|1|A|A|1502
9RPF|1|A|G|1503
9RPF|1|A|U|1504
*
9RPF|1|A|A|1546
9RPF|1|A|U|1547
9RPF|1|A|A|1548
9RPF|1|A|G|1549

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein