IL_9RPV_002

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_002 not in the Motif Atlas

Geometric match to IL_9AXU_066

Geometric discrepancy: 0.2472

The information below is about IL_9AXU_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9RPV|1|E5|U|27
9RPV|1|E5|C|28
*
9RPV|1|E5|G|42
9RPV|1|E5|G|43
9RPV|1|E5|A|44

Current chains

Chain E5

E-site tRNA of the stalled 80S

Nearby chains

Chain RF

40S ribosomal protein S5