IL_9RPV_018

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

9RPV|1|L5|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_018 not in the Motif Atlas

Homologous match to IL_8GLP_018

Geometric discrepancy: 0.0847

The information below is about IL_8GLP_018

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9RPV|1|L5|G|348
9RPV|1|L5|A|349
9RPV|1|L5|C|350
*
9RPV|1|L8|G|25
9RPV|1|L8|C|26

Current chains

Chain L5

28S rRNA of the collided 80S

Chain L8

5.8S rRNA of the collided 80S

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26