IL_9RPV_028

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUGUCGGCGGCCCGG*UCCCCCGACC

Length

25 nucleotides

Bulged bases

9RPV|1|L5|C|501, 9RPV|1|L5|C|502, 9RPV|1|L5|C|503, 9RPV|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|L5|G|491
9RPV|1|L5|U|492
9RPV|1|L5|G|493
9RPV|1|L5|U|494
9RPV|1|L5|C|495
9RPV|1|L5|G|496
9RPV|1|L5|G|497
9RPV|1|L5|C|498
9RPV|1|L5|G|499
9RPV|1|L5|G|500
9RPV|1|L5|C|501
9RPV|1|L5|C|502
9RPV|1|L5|C|503
9RPV|1|L5|G|504
9RPV|1|L5|G|505
*
9RPV|1|L5|U|653
9RPV|1|L5|C|654
9RPV|1|L5|C|655
9RPV|1|L5|C|656
9RPV|1|L5|C|657
9RPV|1|L5|C|658
9RPV|1|L5|G|659
9RPV|1|L5|A|660
9RPV|1|L5|C|661
9RPV|1|L5|C|662

Current chains

Chain L5

28S rRNA of the collided 80S

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18