IL_9RPV_059

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9RPV|1|L5|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_059 not in the Motif Atlas

Homologous match to IL_8GLP_061

Geometric discrepancy: 0.0333

The information below is about IL_8GLP_061

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RPV|1|L5|C|1590
9RPV|1|L5|U|1591
9RPV|1|L5|G|1592
*
9RPV|1|L5|C|1603
9RPV|1|L5|G|1604

Current chains

Chain L5

28S rRNA of the collided 80S

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Lj

Large ribosomal subunit protein eL37