IL_9RPV_178

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

9RPV|1|M5|G|119, 9RPV|1|M5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|118
9RPV|1|M5|G|119
9RPV|1|M5|A|120
9RPV|1|M5|A|121
9RPV|1|M5|U|122
*
9RPV|1|M5|A|147
9RPV|1|M5|C|148
9RPV|1|M5|A|149
9RPV|1|M5|U|150
9RPV|1|M5|G|151
9RPV|1|M5|U|152
9RPV|1|M5|G|153

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M8

5.8S ribosomal RNA; 5.8S rRNA

Chain MG

60S ribosomal protein L7a

Chain MN

60S ribosomal protein L15

Chain Mh

60S ribosomal protein L35