IL_9RPV_182

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_182 not in the Motif Atlas

Geometric match to IL_8B0X_031

Geometric discrepancy: 0.277

The information below is about IL_8B0X_031

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9RPV|1|M5|G|179
9RPV|1|M5|C|180
9RPV|1|M5|C|181
*
9RPV|1|M5|G|256
9RPV|1|M5|C|257

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain ML

Large ribosomal subunit protein eL13

Chain Mh

60S ribosomal protein L35