IL_9RPV_193

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9RPV|1|M5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_193 not in the Motif Atlas

Homologous match to IL_8GLP_024

Geometric discrepancy: 0.0767

The information below is about IL_8GLP_024

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9RPV|1|M5|C|459
9RPV|1|M5|C|460
*
9RPV|1|M5|G|695
9RPV|1|M5|C|696
9RPV|1|M5|G|697

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain ME

Large ribosomal subunit protein eL6

Chain Mr

Large ribosomal subunit protein eL28