IL_9RPV_205

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

9RPV|1|M5|A|932, 9RPV|1|M5|G|933, 9RPV|1|M5|C|934, 9RPV|1|M5|A|935, 9RPV|1|M5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|A|732
9RPV|1|M5|A|733
9RPV|1|M5|G|734
9RPV|1|M5|G|735
*
9RPV|1|M5|C|928
9RPV|1|M5|A|929
9RPV|1|M5|G|930
9RPV|1|M5|C|931
9RPV|1|M5|A|932
9RPV|1|M5|G|933
9RPV|1|M5|C|934
9RPV|1|M5|A|935
9RPV|1|M5|C|936
9RPV|1|M5|U|937

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MC

60S ribosomal protein L4

Chain MM

60S ribosomal protein L14

Chain MS

60S ribosomal protein L18a