IL_9RPV_224

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

(OMG)A(A2M)AG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9RPV|1|M5|A|1650, 9RPV|1|M5|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|OMG|1522
9RPV|1|M5|A|1523
9RPV|1|M5|A2M|1524
9RPV|1|M5|A|1525
9RPV|1|M5|G|1526
*
9RPV|1|M5|C|1648
9RPV|1|M5|U|1649
9RPV|1|M5|A|1650
9RPV|1|M5|G|1651
9RPV|1|M5|U|1652
9RPV|1|M5|A|1653
9RPV|1|M5|G|1654
9RPV|1|M5|C|1655

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MC

60S ribosomal protein L4

Chain ML

Large ribosomal subunit protein eL13

Chain MN

60S ribosomal protein L15

Chain Ma

Large ribosomal subunit protein uL15

Chain Mj

Large ribosomal subunit protein eL37