IL_9RPV_227

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_227 not in the Motif Atlas

Homologous match to IL_8GLP_059

Geometric discrepancy: 0.046

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9RPV|1|M5|C|1551
9RPV|1|M5|G|1552
9RPV|1|M5|A|1553
9RPV|1|M5|A|1554
9RPV|1|M5|G|1555
*
9RPV|1|M5|U|1572
9RPV|1|M5|G|1573
9RPV|1|M5|G|1574
9RPV|1|M5|A|1575
9RPV|1|M5|G|1576

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MA

Large ribosomal subunit protein uL2

Chain MR

60S ribosomal protein L19

Chain Mp

60S ribosomal protein L37a