IL_9RPV_230

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

9RPV|1|M5|OMG|1625, 9RPV|1|M5|A|1637, 9RPV|1|M5|A|1638, 9RPV|1|M5|U|1639

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|G|1624
9RPV|1|M5|OMG|1625
9RPV|1|M5|G|1626
*
9RPV|1|M5|U|1636
9RPV|1|M5|A|1637
9RPV|1|M5|A|1638
9RPV|1|M5|U|1639
9RPV|1|M5|C|1640

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MA

Large ribosomal subunit protein uL2

Chain MN

60S ribosomal protein L15

Chain MP

60S ribosomal protein L17

Chain Mj

Large ribosomal subunit protein eL37