IL_9RPV_250

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9RPV|1|M5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_250 not in the Motif Atlas

Homologous match to IL_8GLP_081

Geometric discrepancy: 0.0705

The information below is about IL_8GLP_081

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RPV|1|M5|G|1946
9RPV|1|M5|U|1947
9RPV|1|M5|G|1948
*
9RPV|1|M5|C|2035
9RPV|1|M5|C|2036

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M7

5S ribosomal RNA; 5S rRNA

Chain MH

60S ribosomal protein L9

Chain MS

60S ribosomal protein L18a

Chain Mm

Ubiquitin-ribosomal protein eL40 fusion protein