IL_9RPV_253

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

9RPV|1|M5|G|2343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_253 not in the Motif Atlas

Homologous match to IL_8GLP_084

Geometric discrepancy: 0.0584

The information below is about IL_8GLP_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9RPV|1|M5|C|2290
9RPV|1|M5|G|2291
9RPV|1|M5|C|2292
*
9RPV|1|M5|G|2342
9RPV|1|M5|G|2343
9RPV|1|M5|U|2344
9RPV|1|M5|G|2345

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M8

5.8S ribosomal RNA; 5.8S rRNA

Chain MC

60S ribosomal protein L4

Chain Ma

Large ribosomal subunit protein uL15

Chain Me

60S ribosomal protein L32

Chain Mr

Large ribosomal subunit protein eL28