IL_9RPV_256

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9RPV|1|M5|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_256 not in the Motif Atlas

Homologous match to IL_8GLP_087

Geometric discrepancy: 0.1035

The information below is about IL_8GLP_087

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9RPV|1|M5|U|2312
9RPV|1|M5|A|2313
9RPV|1|M5|G|2314
*
9RPV|1|M5|C|2325
9RPV|1|M5|G|2326

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M8

5.8S ribosomal RNA; 5.8S rRNA

Chain Me

60S ribosomal protein L32

Chain Mr

Large ribosomal subunit protein eL28