IL_9RPV_257

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_257 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0518

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9RPV|1|M5|G|2358
9RPV|1|M5|U|2359
9RPV|1|M5|A|2360
9RPV|1|M5|G|2361
9RPV|1|M5|U|2362
9RPV|1|M5|A2M|2363
9RPV|1|M5|OMG|2364
*
9RPV|1|M5|C|3858
9RPV|1|M5|G|3859
9RPV|1|M5|A|3860
9RPV|1|M5|A|3861
9RPV|1|M5|A|3862
9RPV|1|M5|C|3863

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MC

60S ribosomal protein L4

Chain MP

60S ribosomal protein L17