IL_9RPV_258
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RPV_258 not in the Motif Atlas
- Geometric match to IL_8GLP_089
- Geometric discrepancy: 0.0858
- The information below is about IL_8GLP_089
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.5
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 37
Unit IDs
9RPV|1|M5|G|2406
9RPV|1|M5|G|2407
9RPV|1|M5|U|2408
9RPV|1|M5|U|2409
*
9RPV|1|M5|A|2783
9RPV|1|M5|C|2784
Current chains
- Chain M5
- 28S rRNA of the stalled 80S
Nearby chains
- Chain MX
- 60S ribosomal protein L23a
- Chain Mg
- 60S ribosomal protein L34
- Chain Mj
- Large ribosomal subunit protein eL37
- Chain Ml
- 60S ribosomal protein L39
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