IL_9RPV_260

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUGAG*CGAAAG

Length

11 nucleotides

Bulged bases

9RPV|1|M5|A|2512, 9RPV|1|M5|A|2513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|2446
9RPV|1|M5|U|2447
9RPV|1|M5|G|2448
9RPV|1|M5|A|2449
9RPV|1|M5|G|2450
*
9RPV|1|M5|C|2509
9RPV|1|M5|G|2510
9RPV|1|M5|A|2511
9RPV|1|M5|A|2512
9RPV|1|M5|A|2513
9RPV|1|M5|G|2514

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M8

5.8S ribosomal RNA; 5.8S rRNA

Chain MA

Large ribosomal subunit protein uL2

Chain Mg

60S ribosomal protein L34

Chain Mj

Large ribosomal subunit protein eL37

Chain Ml

60S ribosomal protein L39