IL_9RPV_286

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9RPV|1|M5|A2M|3785, 9RPV|1|M5|C|3791, 9RPV|1|M5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|3781
9RPV|1|M5|5MC|3782
9RPV|1|M5|A|3783
9RPV|1|M5|A|3784
9RPV|1|M5|A2M|3785
9RPV|1|M5|U|3786
9RPV|1|M5|G|3787
9RPV|1|M5|C|3788
9RPV|1|M5|C|3789
9RPV|1|M5|U|3790
9RPV|1|M5|C|3791
9RPV|1|M5|OMG|3792
*
9RPV|1|M5|OMC|3808
9RPV|1|M5|G|3809
9RPV|1|M5|C|3810
9RPV|1|M5|G|3811

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain Mn

60S ribosomal protein L41

Chain S3

Small subunit ribosomal RNA; SSU rRNA