IL_9RPV_289

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

9RPV|1|M5|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_289 not in the Motif Atlas

Homologous match to IL_8GLP_130

Geometric discrepancy: 0.0622

The information below is about IL_8GLP_130

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RPV|1|M5|G|3913
9RPV|1|M5|U|3914
9RPV|1|M5|U|3915
*
9RPV|1|M5|A|4388
9RPV|1|M5|C|4389

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MC

60S ribosomal protein L4

Chain Ma

Large ribosomal subunit protein uL15