IL_9RPV_298

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

U(PSU)GA*(PSU)ACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_298 not in the Motif Atlas

Homologous match to IL_9AXU_094

Geometric discrepancy: 0.1255

The information below is about IL_9AXU_094

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9RPV|1|M5|U|4295
9RPV|1|M5|PSU|4296
9RPV|1|M5|G|4297
9RPV|1|M5|A|4298
*
9RPV|1|M5|PSU|4312
9RPV|1|M5|A|4313
9RPV|1|M5|C|4314
9RPV|1|M5|A|4315

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MD

60S ribosomal protein L5

Chain MQ

60S ribosomal protein L18

Chain MT

60S ribosomal protein L21

Chain Mb

Large ribosomal subunit protein eL29

Chain Mo

Large ribosomal subunit protein eL42