IL_9RPV_308

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9RPV|1|M5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_308 not in the Motif Atlas

Geometric match to IL_8GLP_150

Geometric discrepancy: 0.0924

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9RPV|1|M5|U|4468
9RPV|1|M5|U|4469
9RPV|1|M5|G|4470
*
9RPV|1|M5|C|4485
9RPV|1|M5|C|4486
9RPV|1|M5|A|4487
9RPV|1|M5|A|4488
9RPV|1|M5|G|4489

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MH

60S ribosomal protein L9

Chain MO

60S ribosomal protein L13a

Chain Mm

Ubiquitin-ribosomal protein eL40 fusion protein