IL_9RPV_320

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCG*CU

Length

5 nucleotides

Bulged bases

9RPV|1|M5|C|4741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_320 not in the Motif Atlas

Homologous match to IL_8GLP_165

Geometric discrepancy: 0.1254

The information below is about IL_8GLP_165

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9RPV|1|M5|G|4740
9RPV|1|M5|C|4741
9RPV|1|M5|G|4742
*
9RPV|1|M5|C|4958
9RPV|1|M5|U|4959

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains