IL_9RPV_323

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

9RPV|1|M5|C|4757, 9RPV|1|M5|U|4758, 9RPV|1|M5|A|4764, 9RPV|1|M5|G|4870, 9RPV|1|M5|C|4871, 9RPV|1|M5|G|4873, 9RPV|1|M5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|4756
9RPV|1|M5|C|4757
9RPV|1|M5|U|4758
9RPV|1|M5|C|4759
9RPV|1|M5|G|4760
9RPV|1|M5|G|4761
9RPV|1|M5|A|4762
9RPV|1|M5|U|4763
9RPV|1|M5|A|4764
9RPV|1|M5|G|4765
*
9RPV|1|M5|U|4869
9RPV|1|M5|G|4870
9RPV|1|M5|C|4871
9RPV|1|M5|G|4872
9RPV|1|M5|G|4873
9RPV|1|M5|A|4874
9RPV|1|M5|G|4875
9RPV|1|M5|U|4876
9RPV|1|M5|G|4877

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain ME

Large ribosomal subunit protein eL6

Chain MH

60S ribosomal protein L9

Chain MM

60S ribosomal protein L14

Chain MO

60S ribosomal protein L13a

Chain MS

60S ribosomal protein L18a