IL_9RPV_350

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_350 not in the Motif Atlas

Geometric match to IL_8OI5_037

Geometric discrepancy: 0.1674

The information below is about IL_8OI5_037

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9RPV|1|S2|G|108
9RPV|1|S2|U|109
9RPV|1|S2|U|110
*
9RPV|1|S2|G|351
9RPV|1|S2|U|352
9RPV|1|S2|C|353

Current chains

Chain S2

18S rRNA of the collided 80S

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11