IL_9RPV_452

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGU*AG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_452 not in the Motif Atlas

Homologous match to IL_9PN5_153

Geometric discrepancy: 0.1

The information below is about IL_9PN5_153

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9RPV|1|S3|U|152
9RPV|1|S3|G|153
9RPV|1|S3|U|154
*
9RPV|1|S3|A|164
9RPV|1|S3|G|165
9RPV|1|S3|A2M|166

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain MW

60S ribosomal protein L24

Chain RG

40S ribosomal protein S6

Chain RY

40S ribosomal protein S24