IL_9RPV_471

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9RPV|1|S3|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_471 not in the Motif Atlas

Homologous match to IL_9PN5_172

Geometric discrepancy: 0.1878

The information below is about IL_9PN5_172

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9RPV|1|S3|G|606
9RPV|1|S3|U|607
9RPV|1|S3|C|608
*
9RPV|1|S3|G|635
9RPV|1|S3|C|636

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RD

40S ribosomal protein S3

Chain RJ

40S ribosomal protein S9

Chain Re

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein