IL_9RPV_478

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_478 not in the Motif Atlas

Homologous match to IL_9PN5_179

Geometric discrepancy: 0.1663

The information below is about IL_9PN5_179

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9RPV|1|S3|U|805
9RPV|1|S3|U|806
9RPV|1|S3|G|807
*
9RPV|1|S3|C|856
9RPV|1|S3|U|857
9RPV|1|S3|A|858

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RE

Small ribosomal subunit protein eS4, X isoform

Chain RL

40S ribosomal protein S11

Chain RW

40S ribosomal protein S15a