IL_9RPV_482

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_482 not in the Motif Atlas

Geometric match to IL_9PN5_182

Geometric discrepancy: 0.0658

The information below is about IL_9PN5_182

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.5

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

37

Unit IDs

9RPV|1|S3|A|922
9RPV|1|S3|G|923
*
9RPV|1|S3|C|1019
9RPV|1|S3|A|1020
9RPV|1|S3|U|1021
9RPV|1|S3|U|1022

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RN

40S ribosomal protein S13

Chain RW

40S ribosomal protein S15a

Chain Rb

40S ribosomal protein S27