IL_9RPV_485
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 9RPV|1|S3|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9RPV_485 not in the Motif Atlas
- Homologous match to IL_9PN5_185
- Geometric discrepancy: 0.1553
- The information below is about IL_9PN5_185
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9RPV|1|S3|C|931
9RPV|1|S3|G|932
9RPV|1|S3|G|933
9RPV|1|S3|G|934
9RPV|1|S3|G|935
*
9RPV|1|S3|C|1007
9RPV|1|S3|A|1008
9RPV|1|S3|A|1009
9RPV|1|S3|G|1010
Current chains
- Chain S3
- 18S rRNA of the stalled 80S
Nearby chains
- Chain Mc
- 60S ribosomal protein L30
- Chain RB
- 40S ribosomal protein S3a
- Chain RN
- 40S ribosomal protein S13
- Chain Ra
- 40S ribosomal protein S26
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