IL_9RPV_492

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_492 not in the Motif Atlas

Geometric match to IL_8GLP_245

Geometric discrepancy: 0.091

The information below is about IL_8GLP_245

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9RPV|1|S3|U|1101
9RPV|1|S3|G|1102
9RPV|1|S3|C|1103
*
9RPV|1|S3|G|1129
9RPV|1|S3|G|1130
9RPV|1|S3|G|1131

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain RB

40S ribosomal protein S3a

Chain RN

40S ribosomal protein S13

Chain RR

40S ribosomal protein S17

Chain Ra

40S ribosomal protein S26

Chain Rb

40S ribosomal protein S27