IL_9RPV_527

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUA*U(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RPV_527 not in the Motif Atlas

Homologous match to IL_9PN5_227

Geometric discrepancy: 0.2008

The information below is about IL_9PN5_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55553.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9RPV|1|S3|U|1729
9RPV|1|S3|U|1730
9RPV|1|S3|A|1731
*
9RPV|1|S3|U|1803
9RPV|1|S3|OMU|1804
9RPV|1|S3|G|1805

Current chains

Chain S3

18S rRNA of the stalled 80S

Nearby chains

Chain M5

Large subunit ribosomal RNA; LSU rRNA

Chain MV

60S ribosomal protein L23

Chain RI

40S ribosomal protein S8