IL_9RTU_007

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTU_007 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0961

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9RTU|1|A|C|239
9RTU|1|A|C|240
9RTU|1|A|A|241
9RTU|1|A|G|242
9RTU|1|A|U|243
9RTU|1|A|A|244
9RTU|1|A|G|245
*
9RTU|1|A|C|253
9RTU|1|A|G|254
9RTU|1|A|A|255
9RTU|1|A|A|256
9RTU|1|A|C|257
9RTU|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15