IL_9RTU_030

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTU_030 not in the Motif Atlas

Geometric match to IL_8B0X_094

Geometric discrepancy: 0.2422

The information below is about IL_8B0X_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9RTU|1|A|G|875
9RTU|1|A|C|876
9RTU|1|A|A|877
9RTU|1|A|A|878
9RTU|1|A|G|879
*
9RTU|1|A|C|898
9RTU|1|A|A|899
9RTU|1|A|A|900
9RTU|1|A|C|901
9RTU|1|A|C|902

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain w

Transfer RNA; tRNA