IL_9RTU_177

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTU_177 not in the Motif Atlas

Geometric match to IL_8GLP_279

Geometric discrepancy: 0.1503

The information below is about IL_8GLP_279

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9RTU|1|a|G|1416
9RTU|1|a|G|1417
9RTU|1|a|A|1418
9RTU|1|a|G|1419
*
9RTU|1|a|U|1481
9RTU|1|a|G|1482
9RTU|1|a|A|1483
9RTU|1|a|C|1484

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12