IL_9RTV_053

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

9RTV|1|A|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTV_053 not in the Motif Atlas

Geometric match to IL_8VMA_002

Geometric discrepancy: 0.2527

The information below is about IL_8VMA_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9RTV|1|A|G|1450
9RTV|1|A|C|1451
*
9RTV|1|A|G|1459
9RTV|1|A|U|1460
9RTV|1|A|C|1461

Current chains

Chain A

23S ribosomal RNA

Nearby chains