IL_9RTV_055

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTV_055 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5643

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9RTV|1|A|U|1474
9RTV|1|A|G|1475
9RTV|1|A|U|1476
9RTV|1|A|A|1477
9RTV|1|A|G|1478
*
9RTV|1|A|U|1513
9RTV|1|A|G|1514
9RTV|1|A|A|1515
9RTV|1|A|G|1516
9RTV|1|A|G|1517

Current chains

Chain A

23S ribosomal RNA

Nearby chains