IL_9RTV_135

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9RTV|1|a|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTV_135 not in the Motif Atlas

Geometric match to IL_8B0X_021

Geometric discrepancy: 0.082

The information below is about IL_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9RTV|1|a|G|446
9RTV|1|a|G|447
9RTV|1|a|A|448
9RTV|1|a|G|449
9RTV|1|a|G|450
*
9RTV|1|a|C|483
9RTV|1|a|G|484
9RTV|1|a|U|485
9RTV|1|a|U|486
9RTV|1|a|A|487
9RTV|1|a|C|488

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain p

30S ribosomal protein S16