IL_9RTV_170

3D structure

PDB id

9RTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

9RTV|1|a|A|1257, 9RTV|1|a|A|1280, 9RTV|1|a|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RTV_170 not in the Motif Atlas

Geometric match to IL_8B0X_054

Geometric discrepancy: 0.1909

The information below is about IL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9RTV|1|a|G|1255
9RTV|1|a|A|1256
9RTV|1|a|A|1257
9RTV|1|a|G|1258
*
9RTV|1|a|C|1277
9RTV|1|a|G|1278
9RTV|1|a|G|1279
9RTV|1|a|A|1280
9RTV|1|a|C|1281
9RTV|1|a|C|1282

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14