IL_9RU6_098

3D structure

PDB id

9RU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome bound to TACO1 (Translational activator of COX1), mRNA, A/A-, P/P- and (partial) E/E-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

9RU6|1|AA|C|1484, 9RU6|1|AA|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU6_098 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1631

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9RU6|1|AA|C|1483
9RU6|1|AA|C|1484
9RU6|1|AA|G|1485
*
9RU6|1|AA|C|1566
9RU6|1|AA|A|1567
9RU6|1|AA|U|1568
9RU6|1|AA|G|1569

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain A3

Aurora kinase A-interacting protein

Chain Ax

Transfer RNA; tRNA

Chain Az

mRNA (34-MER)