IL_9RU8_065

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGG*CUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU8_065 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3324

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.4

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9RU8|1|L5|U|1756
9RU8|1|L5|U|1757
9RU8|1|L5|G|1758
9RU8|1|L5|G|1759
*
9RU8|1|L5|C|1772
9RU8|1|L5|U|1773
9RU8|1|L5|C|1774
9RU8|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10