IL_9RU8_083

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

9RU8|1|L5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RU8_083 not in the Motif Atlas

Homologous match to IL_8GLP_301

Geometric discrepancy: 0.0651

The information below is about IL_8GLP_301

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.4

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

9RU8|1|L5|U|2415
9RU8|1|L5|G|2416
9RU8|1|L5|A|2417
9RU8|1|L5|A|2418
9RU8|1|L5|C|2419
*
9RU8|1|L5|G|2427
9RU8|1|L5|A|2428
9RU8|1|L5|A|2429

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22

Chain LR

60S ribosomal protein L19

Chain Ll

Large ribosomal subunit protein eL39